Protected Attributes | List of all members
DAJacCon Class Reference
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Protected Attributes

const word modelType_
 the name of the jacCon matrix More...
 
const fvMesh & mesh_
 fvMesh More...
 
const DAOptiondaOption_
 DAOption object. More...
 
const DAModeldaModel_
 DAModel object. More...
 
const DAIndexdaIndex_
 DAIndex object. More...
 
DAColoring daColoring_
 DAColoring object. More...
 
DAField daField_
 DAField object. More...
 
HashTable< wordList > stateInfo_
 the regState_ list from DAStateInfo object More...
 
Mat stateBoundaryCon_
 matrix to store boundary connectivity levels for state Jacobians More...
 
Mat stateBoundaryConID_
 matrix to store boundary connectivity ID for state Jacobians More...
 
labelList neiBFaceGlobalCompact_
 neibough face global index for a given local boundary face More...
 
Mat jacCon_
 Jacobian connectivity mat. More...
 
Vec jacConColors_
 jacCon matrix colors More...
 
label nJacConColors_
 number of jacCon colors More...
 

on- and off-diagonal preallocation sizes for each row of dRdW, dRdWT, and dRdXv

Vec dRdWTPreallocOn_
 
Vec dRdWTPreallocOff_
 
Vec dRdWPreallocOn_
 
Vec dRdWPreallocOff_
 
Vec isPIVBCState_
 a vector to show whether a state is connected to a pressureInletVelocity boundary face (3 level max) More...
 
void initializeStateBoundaryCon ()
 initialize state boundary connection More...
 
void calcNeiBFaceGlobalCompact (labelList &neiBFaceGlobalCompact)
 calculate DAJacCon::neiBFaceGlobalCompact_ More...
 
label getLocalCoupledBFaceIndex (const label localFaceI) const
 given a local face index, return the local index of the coupled boundary face More...
 
void setupStateBoundaryCon (Mat *stateBoundaryCon)
 calculate DAJacCon::stateBoundaryCon_ More...
 
void setupStateBoundaryConID (Mat *stateBoundaryConID)
 calculate DAJacCon::stateBoundaryConID_ More...
 
void createConnectionMat (Mat *connectedStates)
 allocate connectedState matrix More...
 
void addStateConnections (Mat connections, const label cellI, const label connectedLevelLocal, const wordList connectedStatesLocal, const List< List< word >> connectedStateInterProc, const label addFace)
 a high-level function to add connected state column indices to the connectivity matrix More...
 
void setConnections (Mat conMat, const label idx) const
 add value 1 for the colume idx to conMat More...
 
void setupJacobianConnections (Mat conMat, Mat connections, const label idxI)
 assign values in connections to a specific row idxI in conMat More...
 
void combineStateBndCon (Mat *stateBoundaryCon, Mat *stateBoundaryConTmp)
 combine stateBoundaryCon and stateBoundaryConTmp, this is to ensure including all connected states for parallel cases More...
 
void addConMatCell (Mat conMat, const label gRow, const label cellI, const word stateName, const PetscScalar val)
 add val to the gRow row in conMat, the column indice are the state (given by stateName) for a given cellI More...
 
void addConMatNeighbourCells (Mat conMat, const label gRow, const label cellI, const word stateName, const PetscScalar val)
 add val to gRow row in conMat, column indice are the neighbouring states (given by stateName) for a given cellI More...
 
void addConMatCellFaces (Mat conMat, const label gRow, const label cellI, const word stateName, const PetscScalar val)
 add val to gRow row in conMat, column indice are the faces (given by stateName) for a given cellI More...
 
void addBoundaryFaceConnections (Mat conMat, const label gRow, const label cellI, const labelList v, const List< List< word >> connectedStates, const label addFaces)
 add the column index of the (iner-proc) connected states and faces to conMat, given a local face index More...
 
void clearDAJacConMembers ()
 clear members in DAJacCon More...
 
void checkSpecialBCs ()
 check if there is special boundary conditions that need special treatment in jacCon_ More...
 
void setPIVVec (Vec iSPIV, const label idxI)
 function used to add connectivity for pressureInletVelocity More...
 
label addPhi4PIV (const word stateName, const label idxI, const label comp=-1)
 add connectivity phi for pressureInletVelocity More...
 
void initializePetscVecs ()
 initialize petsc vectors More...
 
void allocateJacobianConnections (Vec preallocOnProc, Vec preallocOffProc, Vec preallocOnProcT, Vec preallocOffProcT, Mat connections, const label row)
 compute preallocation vectors More...
 
void preallocateJacobianMatrix (Mat dRMat, const Vec preallocOnProc, const Vec preallocOffProc) const
 compute preallocation vectors More...
 
void setupdRdWCon (const HashTable< List< List< word >>> &stateResConInfo, const label isPrealloc)
 
 DAJacCon (const word modelType, const fvMesh &mesh, const DAOption &daOption, const DAModel &daModel, const DAIndex &daIndex)
 
virtual ~DAJacCon ()
 
void clear ()
 clear members in parent and child objects More...
 
void setupJacConPreallocation (const dictionary &options)
 calculate the preallocation vector for initializing the JacCon mat, if necessary More...
 
void initializeJacCon (const dictionary &options)
 initialize the state Jacobian connectivity matrix More...
 
void setupJacCon (const dictionary &options)
 assign 1 to all non-zero elements for the Jacobian connecitivyt matrix More...
 
label getNJacConColors () const
 get the number of JacCon colors More...
 
void preallocatedRdW (Mat dRMat, const label transposed) const
 preallocate dRdW matrix using the preallocVec More...
 
void calcJacConColoring (const word postFix="")
 compute graph coloring for Jacobian connectivity matrix More...
 
void readJacConColoring (const word postFix="")
 read colors for JacCon More...
 
label coloringExists (const word postFix="") const
 whether the coloring file exists More...
 
Vec getJacConColor () const
 return DAJacCon::jacConColors_ More...
 
void calcColoredColumns (const label colorI, Vec coloredColumn) const
 calculate the colored column vector More...
 

Detailed Description

Definition at line 35 of file DAJacCon.H.

Constructor & Destructor Documentation

◆ DAJacCon()

DAJacCon ( const word  modelType,
const fvMesh &  mesh,
const DAOption daOption,
const DAModel daModel,
const DAIndex daIndex 
)

◆ ~DAJacCon()

virtual ~DAJacCon ( )
inlinevirtual

Definition at line 233 of file DAJacCon.H.

Member Function Documentation

◆ initializeStateBoundaryCon()

void initializeStateBoundaryCon ( )
protected

◆ calcNeiBFaceGlobalCompact()

void calcNeiBFaceGlobalCompact ( labelList &  neiBFaceGlobalCompact)
protected

calculate DAJacCon::neiBFaceGlobalCompact_

Definition at line 686 of file DAJacCon.C.

References DAJacCon::daIndex_, forAll(), DAIndex::globalCoupledBFaceNumbering, DAJacCon::mesh_, DAIndex::nLocalBoundaryFaces, and DAIndex::nLocalInternalFaces.

Referenced by DAJacCon::initializeStateBoundaryCon().

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◆ getLocalCoupledBFaceIndex()

label getLocalCoupledBFaceIndex ( const label  localFaceI) const
protected

given a local face index, return the local index of the coupled boundary face

Definition at line 753 of file DAJacCon.C.

References forAll(), and DAJacCon::mesh_.

Referenced by DAJacCon::addBoundaryFaceConnections(), and DAJacCon::setupdRdWCon().

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◆ setupStateBoundaryCon()

void setupStateBoundaryCon ( Mat *  stateBoundaryCon)
protected

◆ setupStateBoundaryConID()

void setupStateBoundaryConID ( Mat *  stateBoundaryConID)
protected

◆ createConnectionMat()

void createConnectionMat ( Mat *  connectedStates)
protected

allocate connectedState matrix

Definition at line 146 of file DAJacCon.C.

References DAJacCon::daIndex_, and DAIndex::nGlobalAdjointStates.

Referenced by DAJacCon::setupdRdWCon().

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◆ addStateConnections()

void addStateConnections ( Mat  connections,
const label  cellI,
const label  connectedLevelLocal,
const wordList  connectedStatesLocal,
const List< List< word >>  connectedStateInterProc,
const label  addFace 
)
protected

a high-level function to add connected state column indices to the connectivity matrix

Definition at line 304 of file DAJacCon.C.

References DAJacCon::addBoundaryFaceConnections(), DAJacCon::addConMatCellFaces(), DAJacCon::addConMatNeighbourCells(), DAIndex::adjStateType, DAJacCon::daIndex_, forAll(), DAIndex::getGlobalAdjointStateIndex(), DAJacCon::mesh_, DAJacCon::setConnections(), and DAJacCon::stateInfo_.

Referenced by DAJacCon::setupdRdWCon().

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◆ setConnections()

void setConnections ( Mat  conMat,
const label  idx 
) const
protected

add value 1 for the colume idx to conMat

Definition at line 669 of file DAJacCon.C.

Referenced by DAJacCon::addStateConnections(), and DAJacCon::setupdRdWCon().

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◆ setupJacobianConnections()

void setupJacobianConnections ( Mat  conMat,
Mat  connections,
const label  idxI 
)
protected

assign values in connections to a specific row idxI in conMat

Definition at line 111 of file DAJacCon.C.

References dafoam_plot3dtransform::vals.

Referenced by DAJacCon::setupdRdWCon().

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◆ combineStateBndCon()

void combineStateBndCon ( Mat *  stateBoundaryCon,
Mat *  stateBoundaryConTmp 
)
protected

combine stateBoundaryCon and stateBoundaryConTmp, this is to ensure including all connected states for parallel cases

Definition at line 1207 of file DAJacCon.C.

References DAJacCon::addBoundaryFaceConnections(), DAJacCon::daIndex_, forAll(), k, DAJacCon::mesh_, DAJacCon::neiBFaceGlobalCompact_, DAIndex::nLocalAdjointStates, DAIndex::nLocalCoupledBFaces, DAIndex::nLocalInternalFaces, and dafoam_plot3dtransform::vals.

Referenced by DAJacCon::setupStateBoundaryCon().

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◆ addConMatCell()

void addConMatCell ( Mat  conMat,
const label  gRow,
const label  cellI,
const word  stateName,
const PetscScalar  val 
)
protected

add val to the gRow row in conMat, the column indice are the state (given by stateName) for a given cellI

Definition at line 1509 of file DAJacCon.C.

References DAIndex::adjStateType, DAJacCon::daIndex_, and DAIndex::getGlobalAdjointStateIndex().

Referenced by DAJacCon::setupStateBoundaryCon().

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◆ addConMatNeighbourCells()

void addConMatNeighbourCells ( Mat  conMat,
const label  gRow,
const label  cellI,
const word  stateName,
const PetscScalar  val 
)
protected

add val to gRow row in conMat, column indice are the neighbouring states (given by stateName) for a given cellI

Definition at line 1568 of file DAJacCon.C.

References DAIndex::adjStateType, DAJacCon::daIndex_, forAll(), DAIndex::getGlobalAdjointStateIndex(), and DAJacCon::mesh_.

Referenced by DAJacCon::addStateConnections(), and DAJacCon::setupStateBoundaryCon().

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◆ addConMatCellFaces()

void addConMatCellFaces ( Mat  conMat,
const label  gRow,
const label  cellI,
const word  stateName,
const PetscScalar  val 
)
protected

add val to gRow row in conMat, column indice are the faces (given by stateName) for a given cellI

Definition at line 1637 of file DAJacCon.C.

References DAJacCon::daIndex_, forAll(), DAIndex::getGlobalAdjointStateIndex(), and DAJacCon::mesh_.

Referenced by DAJacCon::addStateConnections(), and DAJacCon::setupStateBoundaryCon().

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◆ addBoundaryFaceConnections()

void addBoundaryFaceConnections ( Mat  conMat,
const label  gRow,
const label  cellI,
const labelList  v,
const List< List< word >>  connectedStates,
const label  addFaces 
)
protected

add the column index of the (iner-proc) connected states and faces to conMat, given a local face index

Definition at line 1693 of file DAJacCon.C.

References DAIndex::adjStateID, DAJacCon::daIndex_, forAll(), DAJacCon::getLocalCoupledBFaceIndex(), DAIndex::globalCoupledBFaceNumbering, DAIndex::isCoupledFace, DAJacCon::mesh_, DAJacCon::stateBoundaryCon_, DAJacCon::stateBoundaryConID_, and dafoam_plot3dtransform::vals.

Referenced by DAJacCon::addStateConnections(), DAJacCon::combineStateBndCon(), and DAJacCon::setupStateBoundaryCon().

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◆ clearDAJacConMembers()

void clearDAJacConMembers ( )
inlineprotected

clear members in DAJacCon

Definition at line 173 of file DAJacCon.H.

References DAJacCon::jacCon_, DAJacCon::jacConColors_, DAJacCon::neiBFaceGlobalCompact_, DAJacCon::stateBoundaryCon_, DAJacCon::stateBoundaryConID_, and DAJacCon::stateInfo_.

Referenced by DAJacCon::clear().

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◆ checkSpecialBCs()

void checkSpecialBCs ( )
protected

check if there is special boundary conditions that need special treatment in jacCon_

Definition at line 2824 of file DAJacCon.C.

References DAJacCon::daField_, DAJacCon::daIndex_, DAJacCon::daOption_, forAll(), DAOption::getAllOptions(), DAJacCon::isPIVBCState_, DAJacCon::mesh_, DAIndex::nLocalAdjointStates, DAJacCon::setPIVVec(), DAField::specialBCs, U, and DAUtility::writeVectorASCII().

Referenced by DAJacCon::DAJacCon().

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◆ setPIVVec()

void setPIVVec ( Vec  iSPIV,
const label  idxI 
)
protected

function used to add connectivity for pressureInletVelocity

Definition at line 2905 of file DAJacCon.C.

References DAIndex::adjStateNames, DAIndex::adjStateType, DAJacCon::daIndex_, forAll(), DAIndex::getGlobalAdjointStateIndex(), and DAJacCon::mesh_.

Referenced by DAJacCon::checkSpecialBCs().

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◆ addPhi4PIV()

label addPhi4PIV ( const word  stateName,
const label  idxI,
const label  comp = -1 
)
protected

add connectivity phi for pressureInletVelocity

Definition at line 2942 of file DAJacCon.C.

References DAJacCon::daIndex_, DAIndex::getLocalAdjointStateIndex(), DAJacCon::isPIVBCState_, and DAUtility::isValueCloseToRef().

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◆ initializePetscVecs()

void initializePetscVecs ( )
protected

initialize petsc vectors

Definition at line 83 of file DAJacCon.C.

References DAJacCon::daIndex_, DAJacCon::dRdWPreallocOff_, DAJacCon::dRdWPreallocOn_, DAJacCon::dRdWTPreallocOff_, DAJacCon::dRdWTPreallocOn_, DAJacCon::jacConColors_, and DAIndex::nLocalAdjointStates.

Referenced by DAJacCon::DAJacCon().

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◆ allocateJacobianConnections()

void allocateJacobianConnections ( Vec  preallocOnProc,
Vec  preallocOffProc,
Vec  preallocOnProcT,
Vec  preallocOffProcT,
Mat  connections,
const label  row 
)
protected

compute preallocation vectors

Definition at line 2602 of file DAJacCon.C.

References DAJacCon::daIndex_, DAIndex::globalAdjointStateNumbering, DAUtility::isValueCloseToRef(), DAIndex::nLocalAdjointStates, and dafoam_plot3dtransform::vals.

Referenced by DAJacCon::setupdRdWCon().

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◆ preallocateJacobianMatrix()

void preallocateJacobianMatrix ( Mat  dRMat,
const Vec  preallocOnProc,
const Vec  preallocOffProc 
) const
protected

compute preallocation vectors

Definition at line 173 of file DAJacCon.C.

References DAJacCon::daIndex_, and DAIndex::nLocalAdjointStates.

Referenced by DAJacCon::initializeJacCon(), and DAJacCon::preallocatedRdW().

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◆ setupdRdWCon()

void setupdRdWCon ( const HashTable< List< List< word >>> &  stateResConInfo,
const label  isPrealloc 
)
protected

◆ clear()

void clear ( )

clear members in parent and child objects

Definition at line 2966 of file DAJacCon.C.

References DAJacCon::clearDAJacConMembers(), DAJacCon::dRdWPreallocOff_, DAJacCon::dRdWPreallocOn_, DAJacCon::dRdWTPreallocOff_, and DAJacCon::dRdWTPreallocOn_.

Referenced by DASolver::calcdRdWT(), and DASolver::runColoring().

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◆ setupJacConPreallocation()

void setupJacConPreallocation ( const dictionary &  options)

calculate the preallocation vector for initializing the JacCon mat, if necessary

Definition at line 2016 of file DAJacCon.C.

References DAJacCon::setupdRdWCon().

Referenced by DASolver::calcdRdWT(), and DASolver::runColoring().

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◆ initializeJacCon()

void initializeJacCon ( const dictionary &  options)

initialize the state Jacobian connectivity matrix

Definition at line 254 of file DAJacCon.C.

References DAJacCon::daIndex_, DAJacCon::daOption_, DAJacCon::dRdWPreallocOff_, DAJacCon::dRdWPreallocOn_, DAOption::getOption(), DAJacCon::jacCon_, DAIndex::nLocalAdjointStates, and DAJacCon::preallocateJacobianMatrix().

Referenced by DASolver::calcdRdWT(), and DASolver::runColoring().

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◆ setupJacCon()

void setupJacCon ( const dictionary &  options)

assign 1 to all non-zero elements for the Jacobian connecitivyt matrix

Definition at line 286 of file DAJacCon.C.

References DAJacCon::setupdRdWCon().

Referenced by DASolver::calcdRdWT(), and DASolver::runColoring().

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◆ getNJacConColors()

label getNJacConColors ( ) const
inline

get the number of JacCon colors

Definition at line 252 of file DAJacCon.H.

References DAJacCon::nJacConColors_.

Referenced by DAPartDeriv::calcPartDerivMat().

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◆ preallocatedRdW()

void preallocatedRdW ( Mat  dRMat,
const label  transposed 
) const

preallocate dRdW matrix using the preallocVec

Definition at line 228 of file DAJacCon.C.

References DAJacCon::dRdWPreallocOff_, DAJacCon::dRdWPreallocOn_, DAJacCon::dRdWTPreallocOff_, DAJacCon::dRdWTPreallocOn_, and DAJacCon::preallocateJacobianMatrix().

Referenced by DAPartDeriv::initializePartDerivMat().

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◆ calcJacConColoring()

void calcJacConColoring ( const word  postFix = "")

compute graph coloring for Jacobian connectivity matrix

Definition at line 1917 of file DAJacCon.C.

References DAJacCon::daColoring_, DAJacCon::daOption_, DAOption::getOption(), DAJacCon::jacCon_, DAJacCon::jacConColors_, DAJacCon::modelType_, DAJacCon::nJacConColors_, DAColoring::parallelD2Coloring(), DAColoring::validateColoring(), and DAUtility::writeVectorBinary().

Referenced by DASolver::runColoring().

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◆ readJacConColoring()

void readJacConColoring ( const word  postFix = "")

read colors for JacCon

Definition at line 1980 of file DAJacCon.C.

References DAJacCon::daColoring_, DAJacCon::jacCon_, DAJacCon::jacConColors_, DAJacCon::modelType_, DAJacCon::nJacConColors_, DAUtility::readVectorBinary(), and DAColoring::validateColoring().

Referenced by DASolver::calcdRdWT().

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◆ coloringExists()

label coloringExists ( const word  postFix = "") const

whether the coloring file exists

Definition at line 1886 of file DAJacCon.C.

References DAJacCon::modelType_.

Referenced by DASolver::runColoring().

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◆ getJacConColor()

Vec getJacConColor ( ) const
inline

return DAJacCon::jacConColors_

Definition at line 272 of file DAJacCon.H.

References DAJacCon::jacConColors_.

Referenced by DAPartDeriv::calcPartDerivMat().

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◆ calcColoredColumns()

void calcColoredColumns ( const label  colorI,
Vec  coloredColumn 
) const

calculate the colored column vector

Definition at line 2691 of file DAJacCon.C.

References DAJacCon::daOption_, DAOption::getOption(), DAUtility::isValueCloseToRef(), DAJacCon::jacCon_, and DAJacCon::jacConColors_.

Referenced by DAPartDeriv::calcPartDerivMat().

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Member Data Documentation

◆ modelType_

const word modelType_
protected

the name of the jacCon matrix

Definition at line 47 of file DAJacCon.H.

Referenced by DAJacCon::calcJacConColoring(), DAJacCon::coloringExists(), and DAJacCon::readJacConColoring().

◆ mesh_

const fvMesh& mesh_
protected

◆ daOption_

const DAOption& daOption_
protected

◆ daModel_

const DAModel& daModel_
protected

DAModel object.

Definition at line 56 of file DAJacCon.H.

◆ daIndex_

const DAIndex& daIndex_
protected

◆ daColoring_

DAColoring daColoring_
protected

DAColoring object.

Definition at line 62 of file DAJacCon.H.

Referenced by DAJacCon::calcJacConColoring(), and DAJacCon::readJacConColoring().

◆ daField_

DAField daField_
protected

DAField object.

Definition at line 65 of file DAJacCon.H.

Referenced by DAJacCon::checkSpecialBCs(), and DAJacCon::setupdRdWCon().

◆ stateInfo_

HashTable<wordList> stateInfo_
protected

◆ stateBoundaryCon_

Mat stateBoundaryCon_
protected

matrix to store boundary connectivity levels for state Jacobians

Definition at line 71 of file DAJacCon.H.

Referenced by DAJacCon::addBoundaryFaceConnections(), DAJacCon::clearDAJacConMembers(), DAJacCon::initializeStateBoundaryCon(), DAJacCon::setupdRdWCon(), and DAJacCon::setupStateBoundaryConID().

◆ stateBoundaryConID_

Mat stateBoundaryConID_
protected

matrix to store boundary connectivity ID for state Jacobians

Definition at line 74 of file DAJacCon.H.

Referenced by DAJacCon::addBoundaryFaceConnections(), DAJacCon::clearDAJacConMembers(), DAJacCon::initializeStateBoundaryCon(), and DAJacCon::setupdRdWCon().

◆ neiBFaceGlobalCompact_

labelList neiBFaceGlobalCompact_
protected

neibough face global index for a given local boundary face

Definition at line 77 of file DAJacCon.H.

Referenced by DAJacCon::clearDAJacConMembers(), DAJacCon::combineStateBndCon(), DAJacCon::initializeStateBoundaryCon(), and DAJacCon::setupStateBoundaryCon().

◆ jacCon_

Mat jacCon_
protected

◆ jacConColors_

Vec jacConColors_
protected

◆ nJacConColors_

label nJacConColors_
protected

number of jacCon colors

Definition at line 86 of file DAJacCon.H.

Referenced by DAJacCon::calcJacConColoring(), DAJacCon::getNJacConColors(), and DAJacCon::readJacConColoring().

◆ dRdWTPreallocOn_

Vec dRdWTPreallocOn_
protected

◆ dRdWTPreallocOff_

Vec dRdWTPreallocOff_
protected

◆ dRdWPreallocOn_

Vec dRdWPreallocOn_
protected

◆ dRdWPreallocOff_

Vec dRdWPreallocOff_
protected

◆ isPIVBCState_

Vec isPIVBCState_
protected

a vector to show whether a state is connected to a pressureInletVelocity boundary face (3 level max)

Definition at line 188 of file DAJacCon.H.

Referenced by DAJacCon::addPhi4PIV(), and DAJacCon::checkSpecialBCs().


The documentation for this class was generated from the following files: